Pyteomics API documentation¶
This section documents all user functions and data available in Pyteomics. You can access all of this info off-line from your Python interpreter.
Contents:
- parser - operations on modX peptide sequences
- mass - molecular masses and isotope distributions
- unimod - interface to the Unimod database
- achrom - additive model of polypeptide chromatography
- electrochem - electrochemical properties of polypeptides
- fasta - manipulations with FASTA databases
- peff - PSI Extended FASTA Format
- mzml - reader for mass spectrometry data in mzML format
- mzxml - reader for mass spectrometry data in mzXML format
- mzmlb - reader for mass spectrometry data in mzMLb format
- mgf - read and write MS/MS data in Mascot Generic Format
- ms1 - read and write MS/MS data in MS1 format
- ms2 - read and write MS/MS data in MS2 format
- pepxml - pepXML file reader
- protxml - parsing of ProteinProphet output files
- tandem - X!Tandem output file reader
- mzid - mzIdentML file reader
- mztab - mzTab file reader
- usi - Universal Spectrum Identifier (USI) parser and minimal PROXI client
- proforma - Proteoform and Peptidoform Notation
- featurexml - reader for featureXML files
- trafoxml - reader for trafoXML files
- idxml - idXML file reader
- traml - targeted MS transition data in TraML format
- pylab_aux - auxiliary functions for plotting with pylab
- xml - utilities for XML parsing
- auxiliary - common functions and objects
- version - Pyteomics version information