Supported Python versions¶

Pyteomics supports Python 2.7 and Python 3.3+.

Install with pip¶

The main way to obtain Pyteomics is via pip Python package manager:

pip install pyteomics

Install with conda¶

You can also install Pyteomics from Bioconda using conda:

conda install -c bioconda pyteomics

Project dependencies¶

Some functionality in Pyteomics relies on other packages:

• numpy;

• matplotlib (used by pyteomics.pylab_aux);

• lxml (used by XML parsing modules and pyteomics.mass.mass.Unimod);

• pandas (can be used with pyteomics.pepxml, pyteomics.tandem, pyteomics.mzid, pyteomics.auxiliary);

• sqlalchemy (used by pyteomics.mass.unimod);

• pynumpress (adds support for Numpress compression in mzML);

• h5py and optionally hdf5plugin (used by pyteomics.mzmlb);

• psims (used py pyteomics.proforma);

• spectrum_utils (optionally used for spectrum annotation in pyteomics.pylab_aux).

All dependencies are optional.

pip install pyteomics[XML]