Supported Python versions¶

Pyteomics supports Python 2.7 and Python 3.3+.

Project dependencies¶

Pyteomics uses the following Python packages:

• numpy
• matplotlib (used by pyteomics.pylab_aux)
• lxml (used by XML parsing modules)
• pandas (can be used with pyteomics.pepxml, pyteomics.tandem, pyteomics.mzid, pyteomics.auxiliary)
• sqlalchemy (used by pyteomics.mass.unimod)
• pynumpress (adds support for Numpress compression)

All dependencies are optional.

GNU/Linux¶

The preferred way to obtain Pyteomics is via pip Python package manager. The shell code for a freshly installed Ubuntu system:

sudo apt-get install python-setuptools python-dev build-essential
sudo easy_install pip
sudo pip install lxml numpy matplotlib pyteomics

Windows¶

• Get pip, if you don’t have it yet.

• Install Pyteomics and its dependencies:

  pip install lxml numpy matplotlib pyteomics